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USDM Evo 8 same lines connected the same way. Obviously these are vacuum ports that suck in unfiltered air. Just how much or what sort of porting they connect to and what effect it will have on idle if plugged - dunno.
Other market evo's (I think) don't have an EGR system, so they don't have those tubes there. I'm pretty sure those holes aren't drilled through on OP's car.