You should of had both done at the same time.. It's not hard to change the input shaft bearing you don't have to buy a new trans

 

You still have to open the trani up and the reason i didnt get it done was cuz i thought the input shaft was making the noise i brought it to the garage close to my house and he told me sounds like just ur clutch bearing so i was hoping i didnt have to get the trani opened up

 

My first thought was that it is a noise from the throw out bearing in the clutch. It is actually a pretty common noise.

 

Yeah same cuz when i was pushing down on the clutch the noise would stop but i have had a weird *** noise when driving though it was the ToB but after changing the clutch/flywheel nothing changed same noises in neutral and when im driving so def sucks